Analysis of Environmental Variables and Carbon Input on Soil Microbiome, Metabolome and Disease Control Efficacy in Strawberry Attributable to Anaerobic Soil Disinfestation.

Charcoal rot and Fusarium wilt, caused by Macrophomina phaseolina and Fusarium oxysporum f. sp. fragariae, respectively, are major soil-borne diseases of strawberry that have caused significant crop losses in California. Anaerobic soil disinfestation has been studied as an industry-level option to replace soil fumigants to manage these serious diseases. Studies were conducted to discern whether Gramineae carbon input type, incubation temperature, or incubation duration influences the efficacy of this disease control tactic. In experiments conducted using 'low rate' amendment applications at moderate day/night temperatures (24/18 °C), and carbon inputs (orchard grass, wheat, and rice bran) induced an initial proliferation and subsequent decline in soil density of the Fusarium wilt pathogen. This trend coincided with the onset of anaerobic conditions and a corresponding generation of various anti-fungal compounds, including volatile organic acids, hydrocarbons, and sulfur compounds. Generation of these metabolites was associated with increases in populations of Clostridium spp. Overall, carbon input and incubation temperature, but not incubation duration, significantly influenced disease suppression. All Gramineae carbon inputs altered the soil microbiome and metabolome in a similar fashion, though the timing and maximum yield of specific metabolites varied with input type. Fusarium wilt and charcoal rot suppression were superior when anaerobic soil disinfestation was conducted using standard amendment rates of 20 t ha-1 at elevated temperatures combined with a 3-week incubation period. Findings indicate that anaerobic soil disinfestation can be further optimized by modulating carbon source and incubation temperature, allowing the maximum generation of antifungal toxic volatile compounds. Outcomes also indicate that carbon input and environmental variables may influence treatment efficacy in a target pathogen-dependent manner which will require pathogen-specific optimization of treatment protocols.

Incubation temperature and PCB-126 exposure interactively impair shorebird embryo and post-hatch development.

In oviparous wildlife, many critical physiological and behavioural components are strongly influenced by the embryonic and early post-hatch developmental environment. As such, early life stages in these species are highly vulnerable to both natural and anthropogenic stressors. For example, in birds, incubation temperature may influence the rate of egg development while also affecting contaminant metabolism and absorption in body tissues, resulting in potentially multiplicative impacts on embryonic and posthatch development. We tested the hypothesis that cumulative effects of early contaminant exposure and temperature stress can negatively affect avian development and may have interactive effects that are more detrimental than either stressor individually. Using a controlled egg injection and incubation study on killdeer (Charadrius vociferous), eggs were exposed to a known endocrine disruptor, 3,3',4,4',5-pentachlorobiphenyl (PCB-126) and incubated at either low (36 °C), intermediate (37.5 °C), or high (39 °C) temperatures. Our results indicated that eggs incubated at low temperature had earlier detection of heartbeat, longer incubation length, lower growth rate post-hatch, and higher post-hatch mortality, compared to eggs incubated under intermediate temperatures. Higher incubation temperatures resulted in shorter incubation length, earlier detection of heart rate and faster righting time. As predicted, embryo and chick mortality were greater in the PCB-dosed birds incubated at intermediate and high temperatures. Incidence of distended yolk sacs (%) also increased with PCB exposure in all temperature groups, with the largest increase in the high temperature group. Overall, our results show that low incubation temperature can cause greater adverse effects than PCB-126 exposure alone, but that negative effects of PCB-126 exposure are exacerbated by high incubation temperatures. These findings suggest that in natural settings, shorebird embryos may be more susceptible to contaminant exposure when incubated at temperatures either below or above the apparent optimum.

Delayed egg-laying and shortened incubation duration of Arctic-breeding shorebirds coincide with climate cooling.

Biological impacts of climate change are exemplified by shifts in phenology. As the timing of breeding advances, the within-season relationships between timing of breeding and reproductive traits may change and cause long-term changes in the population mean value of reproductive traits. We investigated long-term changes in the timing of breeding and within-season patterns of clutch size, egg volume, incubation duration, and daily nest survival of three shorebird species between two decades. Based on previously known within-season patterns and assuming a warming trend, we hypothesized that the timing of clutch initiation would advance between decades and would be coupled with increases in mean clutch size, egg volume, and daily nest survival rate. We monitored 1,378 nests of western sandpipers, semipalmated sandpipers, and red-necked phalaropes at a subarctic site during 1993-1996 and 2010-2014. Sandpipers have biparental incubation, whereas phalaropes have uniparental incubation. We found an unexpected long-term cooling trend during the early part of the breeding season. Three species delayed clutch initiation by 5 days in the 2010s relative to the 1990s. Clutch size and daily nest survival showed strong within-season declines in sandpipers, but not in phalaropes. Egg volume showed strong within-season declines in one species of sandpiper, but increased in phalaropes. Despite the within-season patterns in traits and shifts in phenology, clutch size, egg volume, and daily nest survival were similar between decades. In contrast, incubation duration did not show within-season variation, but decreased by 2 days in sandpipers and increased by 2 days in phalaropes. Shorebirds demonstrated variable breeding phenology and incubation duration in relation to climate cooling, but little change in nonphenological components of traits. Our results indicate that the breeding phenology of shorebirds is closely associated with the temperature conditions on breeding ground, the effects of which can vary among reproductive traits and among sympatric species.

Effect of in ovo injection of corticotropin-releasing hormone on the timing of hatching in broiler chickens.

In chicken embryos, intravenous injection of corticotropin-releasing hormone (CRH) causes the release of both corticosteroids and thyroid hormones. These hormones initiate and enhance the hatching process, raising the possibility that CRH treatment of the late chicken embryo could accelerate hatching and/or decrease the spread of hatching. We performed a series of exploratory tests to investigate whether in ovo delivery methods of CRH other than intravenous injection that are more practical in a commercial setting, affect hatching time in broilers. Corticotropin-releasing hormone was injected into the air cell, albumen, or amniotic fluid of broiler breeder eggs, in the last week of embryonic development. Average incubation duration was significantly decreased by 22 h when 2 µg of CRH was injected into the air cell on embryonic day 18 (E18) of Cobb eggs. Acceleration of hatching (but only by 8 h) was also seen for Ross chicks when CRH was injected daily into the albumen between E10 and E18. However, repeats of both experiments did not show consistent effects of CRH on hatching time; in most experiments performed, CRH did not affect hatching time. We speculate that the effectiveness of CRH uptake via these delivery methods and/or the duration and magnitude of the thyroxine and corticosterone response to CRH is not sufficient to have a substantial effect on hatching time. We therefore conclude that in ovo CRH treatment does not seem a feasible option as a practical tool to increase hatchery productivity or to investigate the effects of CRH agonists and antagonists on hatching.

Climate change increases the production of female hatchlings at a northern sea turtle rookery.

The most recent climate change projections show a global increase in temperatures, along with major adjustments to precipitation, throughout the 21st century. Species exhibiting temperature-dependent sex determination are highly susceptible to such changes since the incubation environment influences critical offspring characteristics such as survival and sex ratio. Here we show that the mean incubation duration of loggerhead sea turtle (Caretta caretta) nests from a high-density nesting beach on Bald Head Island, North Carolina, USA has decreased significantly over the past 25 yr. This decrease in incubation duration is significantly positively correlated with mean air temperature and negatively correlated with mean precipitation during the nesting season. Additionally, although no change in hatching success was detected during this same period, a potentially detrimental consequence of shorter incubation durations is that they lead to the production of primarily female offspring. Given that global temperatures are predicted to increase by as much as 4°C over the next century, the mass feminization of sea turtle hatchlings is a high-priority concern. While presently limited in number, studies using long-term data sets to examine the temporal correlation between offspring characteristics and climatic trends are essential for understanding the scope and direction of climate change effects on species persistence.

Candidate gene-environment interactions and their relationships with timing of breeding in a wild bird population.

Monitoring and predicting evolutionary changes underlying current environmental modifications are complex challenges. Recent approaches to achieve these objectives include assessing the genetic variation and effects of candidate genes on traits indicating adaptive potential. In birds, for example, short tandem repeat polymorphism at four candidate genes (CLOCK, NPAS2, ADCYAP1, and CREB1) has been linked to variation in phenological traits such as laying date and timing of migration. However, our understanding of their importance as evolutionary predictors is still limited, mainly because the extent of genotype-environment interactions (GxE) related to these genes has yet to be assessed. Here, we studied a population of Tree swallow (Tachycineta bicolor) over 4 years in southern Québec (Canada) to assess the relationships between those four candidate genes and two phenological traits related to reproduction (laying date and incubation duration) and also determine the importance of GxE in this system. Our results showed that NPAS2 female genotypes were nonrandomly distributed across the study system and formed a longitudinal cline with longer genotypes located to the east. We observed relationships between length polymorphism at all candidate genes and laying date and/or incubation duration, and most of these relationships were affected by environmental variables (breeding density, latitude, or temperature). In particular, the positive relationships detected between laying date and both CLOCK and NPAS2 female genotypes were variable depending on breeding density. Our results suggest that all four candidate genes potentially affect timing of breeding in birds and that GxE are more prevalent and important than previously reported in this context.

Adaptive responses to cool climate promotes persistence of a non-native lizard.

Successful establishment and range expansion of non-native species often require rapid accommodation of novel environments. Here, we use common-garden experiments to demonstrate parallel adaptive evolutionary response to a cool climate in populations of wall lizards (Podarcis muralis) introduced from southern Europe into England. Low soil temperatures in the introduced range delay hatching, which generates directional selection for a shorter incubation period. Non-native lizards from two separate lineages have responded to this selection by retaining their embryos for longer before oviposition--hence reducing the time needed to complete embryogenesis in the nest--and by an increased developmental rate at low temperatures. This divergence mirrors local adaptation across latitudes and altitudes within widely distributed species and suggests that evolutionary responses to climate can be very rapid. When extrapolated to soil temperatures encountered in nests within the introduced range, embryo retention and faster developmental rate result in one to several weeks earlier emergence compared with the ancestral state. We show that this difference translates into substantial survival benefits for offspring. This should promote short- and long-term persistence of non-native populations, and ultimately enable expansion into areas that would be unattainable with incubation duration representative of the native range.

Características da reprodução de tartarugas marinhas (Testudines, Cheloniidae) no litoral sul da Bahia, Brasil / Reproduction of sea turtles (Testudines, Cheloniidae) in the Southern Coast of Bahia, Brazil

Poucos estudos foram realizados sobre a nidificação de tartarugas marinhas no litoral sul da Bahia, região que está passando por um processo rápido de ocupação turística que pode ameaçar ainda mais estas espécies. Por estes motivos, este estudo teve como objetivos identificar as espécies de tartarugas marinhas que desovam no local e descrever as principais características de suas ninhadas. Durante quatro temporadas reprodutivas, de 2004 a 2008, foram identificados e monitorados os ninhos encontrados nas praias localizadas entre Uruçuca e Itacaré no litoral sul da Bahia. As variáveis coletadas foram: tamanho de ninhada, duração da incubação, sucesso de eclosão e fases de mortalidade embrionária. Foi registrada uma média de 37 ± 6,2 ninhos por temporada, com maior freqüência de ninhos das espécies Caretta caretta e Eretmochelys imbricata, tendo sido registradas também desovas esporádicas de Chelonia mydas. A temporada de desova de C. caretta ocorre de outubro a janeiro e de E. imbricata de dezembro a março. Este deslocamento temporal das temporadas reprodutivas pode estar relacionado a uma adaptação para minimizar a competição interespecífica. Além da época de nidificação, as duas espécies diferiram no tamanho de suas ninhadas, mas não diferiram na duração da incubação e no sucesso de eclosão. Diante dos resultados, acredita-se que áreas com baixa concentração de ninhos também devem ser alvo de programas de conservação, devido à sua relevância para a ampliação da variação genotípica e, sobretudo, fenotípica, das espécies de tartarugas marinhas, de forma que as mesmas possam se adaptar e sobreviver às constantes ameaças às quais estão submetidas. Tais programas de conservação podem ser estabelecidos por meio de parcerias entre organizações não governamentais e instituições privadas e a instituição governamental responsável pela conservação das tartarugas marinhas (Centro TAMAR/ICMBio).

Few studies have been carried out on nesting of sea turtles in the southern coast of Bahia, an area that is experiencing a fast process of tourist occupation what can increase levels of threat to these species. Thus, this study aimed to identify sea turtle species that nest in the area and to describe the main characteristics of their clutches. During four reproductive seasons, from 2004 to 2008, we identified and monitored nests found at beaches located between the municipalities of Uruçuca and Itacaré, in the southern coast of Bahia. The collected variables were: clutch size, incubation duration, hatching success and stages of embryonic mortality. We registered an average of 37 ± 6.2 nests per season, with nests of Caretta caretta and Eretmochelys imbricata being more frequent, along with sporadic nests of Chelonia mydas. Nesting season of C. caretta extends from October to January and that of E. imbricata from December to March. This temporary displacement of reproductive seasons might be related to a selective adjustment to minimize competition among species. Besides the time of nesting, the two species differed also in clutch size, but they did not differ in incubation duration and in hatching success. According to our results, we believe that areas with low concentration of nests should also be a target of conservation programs, due to their relevance to the increase of genotypic, and specially fenotypic, variation of sea turtle species, so that Brazilian populations can adapt and survive to the constant threats. Those conservation programs can be established by partnerships between non-governmental organizations and private institutions and the Brazilian government institution for the conservation of sea turtles (Centro TAMAR/ICMBio).

Aspectos ecológicos da determinação sexual em tartarugas / Ecological aspects of turtle sex determination

Os aspectos ecológicos relacionados à reprodução das tartarugas e de outros répteis que apresentam determinação sexual dependente da temperatura de incubação desempenham um papel crucial no equilíbrio das populações. Nestas espécies a razão sexual dos filhotes é controlada pela temperatura a que os ovos são submetidos durante a incubação. Entender como as características do local da desova afetam a temperatura da incubação é essencial para que se possa argüir sobre os fatores que controlam a ecologia, a reprodução e a distribuição geográfica das tartarugas. Este trabalho de revisão aborda o modo de reprodução das tartarugas e a maneira como a reprodução é afetada pelo meio físico.

The ecological aspects related to the reproduction of turtles and other reptiles, which present incubation temperature-dependent sex determination, play a crucial role in their population equilibrium. For such species, the sex ratio of hatchlings is controlled by the nest temperature during incubation. To understand how the nest site characteristics affect temperature is essential for considering the factors which control the ecology, reproduction and distribution of turtles. In this paper, we have made a review on the way turtles reproduce and how the physical environment affects reproduction.

Geological control of Podocnemis expansa and Podocnemis unifilis nesting areas in Rio Javaés, Bananal Island, Brazil / Controle geológico das áreas de nidificação de Podocnemis expansa e Podocnemis unifilis no Rio Javaés, Ilha do Bananal, Brasil

The distribution of the nests of Podocnemis expansa (Amazon turtle) and Podocnemis unifilis (yellow-spotted side neck turtle) along the point bars of the Javaés River in Bananal Island, demonstrates a clear preference of these chelonians for differentiated geological environments, in respect to the morphology, grain size or height of the nests in relation to the level of the river. The topographical distribution and the differences in the grain size of the sediments that compose the point bars of the river, originated from the multiple sedimentary processes, and make possible the creation and separation of different nesting environments. Each turtle species takes advantage of the place that presents physiographic characteristics appropriate to the hatching success of their eggs. The superposition of the P. expansa and P. unifilis nest placement areas is rare. The P. expansa nests are concentrated on the central portion of the beaches where successive depositional sedimentary events produced sandy banks more than 3.3 m above the river water level. The P. unifilis nests are distributed preferentially in the upstream and downstream portions along the point bars where the sandy deposits rarely surpass 1.5 m at the moment of laying. P. expansa nests located on the beaches of fine to medium sized sand hatch in a mean of 68 days, while those incubated on beaches of medium to coarse sand size take a mean of 54 days to hatch.

A distribuição das covas de Podocnemis expansa (tartaruga-da-amazônia) e Podocnemis unifilis (tracajá) ao longo das barras em pontal do rio Javaés na Ilha do Bananal, mostra uma clara preferência destes quelônios por ambientes geológicos diferenciados, seja em relação à morfologia, constituição granulométrica ou altura das covas em relação ao nível do rio. A compartimentação topográfica e as diferenças no tamanho dos sedimentos que compõem as barras em pontal, oriundas de processos sedimentares múltiplos, possibilita a criação e separação de ambientes de nidificação distintos. Cada espécie de quelônio se aproveita do local que apresenta características fisiográficas apropriadas à incubação de seus ovos, sendo rara a superposição das áreas de nidificação de P. expansa e P. unifilis. As covas de P. expansa concentram-se na porção central das praias onde sucessivos eventos de deposição produziram bancos arenosos com uma altura superior a 3,3 m em relação ao nível do rio. As covas de P. unifilis distribuem-se, preferencialmente, nas porções montante e jusante das barras em pontal onde os depósitos arenosos raramente ultrapassam 1,5 m de altura no momento da desova. Covas de P. expansa localizadas nas praias de areia fina a média eclodem, em média, em 68 dias ao passo que aquelas incubadas em praias de areia média a grossa levam, em média, 54 dias para eclodirem.